The research topics of the HRSMC are collected in the three research themes 'Synthesis, Characterisation, Reactivity and Properties of Molecules' (Theme 1), 'Photochemistry and (Laser) Spectroscopy' (Theme 2), and 'Theoretical Chemistry' (Theme 3). In the following table the names of the group leaders involved in the HRSMC per February 2009 and their research themes are collected.
| Theme | Group leader(s) | Institute | Workgroup |
| 1 | Elsevier | HIMS | Coordination and Organometallic Chemistry |
| Hiemstra/Timmerman | HIMS | Biomolecular Synthesis | |
| Lammertsma | EMS | Organophosphorus, Organometallic and Computational Chemistry | |
| Orru | EMS | (Bio) Organic Chemistry | |
| Overkleeft/vdMarel | LIC | Bio-organic Synthesis | |
| Bouwman | LIC | Metals in Catalysis, Biomimetics & Inorganic Materials | |
| Reek/Hartl | HIMS | Supramolecular Catalysis | |
| Wever | HIMS | Bio-organic Chemistry & Bio-catalysts | |
| 2 | Buma/Brouwer | HIMS | Molecular Photonics |
| Linnartz | LO | Laboratory Astrophysics and Astrochemistry | |
| Gooijer | EMS | Analytical Chemistry & Applied Spectroscopy | |
| Groenen/Orrit/Völker | LION | Molecular Nano-Optics and Spins | |
| de Groot/Buda | LIC | Biophysical Organic Chemistry | |
| Janssen | EMS | Physical Chemistry | |
| Koper | LIC | Catalysis and Surface Chemistry | |
| 3 | Baerends/Bickelhaupt/ Visscher |
EMS | Theoretical Chemistry |
| Neugebauer | LIC | Theoretical Chemistry | |
| Bolhuis/ Meijer | HIMS | Computational Chemistry & Physics |
